PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00925g20018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 143aa MW: 16607.2 Da PI: 9.6678

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00925g20018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4e-16	42	133	3	97
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + + +s+v++ l + +fa+++ ++ + l+l+ sW vk+ ++ ++ +t+GWk Fv +n+Lk gD +vF++++ Peinf101Scf00925g20018.1 42 TFMQQSYVSEPYTLGIKITFARKYFEE--NYNYLMLRVHGRGSWPVKC--YRGTKTARITTGWKVFVLDNKLKCGDACVFEVIKG 122 55778999999***********644..344799999999***..88888899*********************9975 PP .SEE..EEEEE CS B3 88 .sefelvvkvf 97 ++ v +f Peinf101Scf00925g20018.1 123 tDQLFIDVAIF 133 46655555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.8E-22	33	136	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-20	33	136	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.78E-14	38	134	No hit	No description
SMART	SM01019	6.7E-5	40	136	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.914	40	136	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-13	41	128	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MQEQLSKIAY DWNQKVRDKV VSAAYQRANS YALKSKNPFL VTFMQQSYVS EPYTLGIKIT 60 FARKYFEENY NYLMLRVHGR GSWPVKCYRG TKTARITTGW KVFVLDNKLK CGDACVFEVI 120 KGTDQLFIDV AIFREDGNTP NMC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613660.1	1e-45	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
Refseq	XP_009613661.1	9e-46	PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
Refseq	XP_016490738.1	1e-45	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X1
Refseq	XP_016490744.1	1e-45	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
Refseq	XP_016490750.1	1e-45	PREDICTED: B3 domain-containing protein Os03g0619600-like isoform X3
Refseq	XP_018629844.1	1e-45	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBL	A0A0V0HLZ2	3e-46	A0A0V0HLZ2_SOLCH; Putative B3 domain-containing protein-like (Fragment)
STRING	XP_009613660.1	4e-45	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400043852	4e-45	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA759	18	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	6e-13	related to vernalization1 1