PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00930g03013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 202aa    MW: 23690.9 Da    PI: 5.9503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00930g03013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-203891457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              ++++++eq++ Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Peinf101Scf00930g03013.1 38 KRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 91
                              45899***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.9573292IPR001356Homeobox domain
SMARTSM003897.0E-203596IPR001356Homeobox domain
CDDcd000861.37E-163793No hitNo description
SuperFamilySSF466891.84E-1837101IPR009057Homeodomain-like
PfamPF000465.6E-173891IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-213999IPR009057Homeodomain-like
PRINTSPR000317.9E-66372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000317.9E-67288IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MLELTRWTFF AVFILLGEVK PRRRRKKNRG EETGIMRKRK LSDEQVNLLE QSFGDEHKLE  60
SERKDKLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYSK LKNEHDTNIV DKCRLENEVL  120
KLKEQLSEAE KEIQRLLMEK PDGVYSSNSP STSSLSMEAI EPPFLGEFGM GGLDITNGFY  180
VPENTYAQGL EWVNLYNIPY DM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12239RRRKKNRGEETGIMRKRK
22439RKKNRGEETGIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504930.14e-94PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-69ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4CUX79e-93A0A1S4CUX7_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009775418.15e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.17e-71homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]