PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00930g04015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bZIP
Protein Properties Length: 367aa    MW: 39513.7 Da    PI: 5.7355
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00930g04015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.81.3e-24268330163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN+aLk+el++l+ e++kl+se+
  Peinf101Scf00930g04015.1 268 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVETLSNENHALKDELQRLSVECEKLTSEN 330
                               89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.9E-3029121IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.9E-18267327No hitNo description
SMARTSM003384.1E-23268332IPR004827Basic-leucine zipper domain
PfamPF001708.7E-22268330IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265270333IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.25E-11271327No hitNo description
CDDcd147021.74E-23273323No hitNo description
PROSITE patternPS000360275290IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
VHLAFVRVHV LLNKQIERGY LTIKLTDVMG AGEESTPTKP SKATAAQETQ ATPSYPDWSS  60
SMQAYYGAGA TPPFFPPAVA SPTPHPYMWG GQHPLMPPYG APVPYPAMYP PAGVYAHPNM  120
PMTPNTLQAN PEADSRAPDG KDQSTSKKLK GSSGGKAGES GKVASGSGND GATRSGESGS  180
EGSSDEDDEN EFSANKSRSF DLMLANGTSA QSNPATGNPV AMPATNLNIG MDLWNQSSAG  240
PGMIKMRPNQ PGVSPAIGRE WVQVDFDERE LKRQKRKQSN RESARRSRLR KQAECEELQQ  300
RVETLSNENH ALKDELQRLS VECEKLTSEN NSIKEELTRL CGPEAVSKLE SNGNATPLQS  360
NVEEANS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290RRSRLRK
2284291RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504929.10.0PREDICTED: G-box-binding factor 1-like
SwissprotP427741e-108GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1S4CV950.0A0A1S4CV95_TOBAC; G-box-binding factor 1-like
STRINGXP_009629662.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-64G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]