PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00930g17014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 338aa MW: 37466 Da PI: 7.5431

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00930g17014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.5	4.1e-69	115	269	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskk 82 +sg++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++ +++ +++++k+kr+ + + Peinf101Scf00930g17014.1 115 GSGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQDEGNQQnlqlSRDNNKHKRQREDPS 199 57899***************************************************999888777887777777777777788 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+l +t+l+s++s l++ ++P++vss+a f+cvr+ssv+d+e++laYq+av+i+Gh+fkGiLydqG+e+ Peinf101Scf00930g17014.1 200 ASSLVCTRLPSNTSG--LQVGKFPAKVSSNAEFHCVRMSSVEDAEDQLAYQAAVNISGHIFKGILYDQGPES 269 999999999999765..88999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.2E-65	118	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-25	219	267	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MANFFSLGGG GTNSQDQQQE ISNSHRTNNQ LTEIGPENWF LYRNNDNQEI QTYKGFELWQ 60 TTPEQQQQQH QQQQQQQQQQ FRHPIYPLQD LYSTAANPVG DHEASRSGFV MMRSGSGGIS 120 CQDCGNQAKK DCQHMRCRTC CKSRGFQCQT HVKSTWVPAA KRRERQQQLS ALQQDEGNQQ 180 NLQLSRDNNK HKRQREDPSA SSLVCTRLPS NTSGLQVGKF PAKVSSNAEF HCVRMSSVED 240 AEDQLAYQAA VNISGHIFKG ILYDQGPESQ YITTGDTSSG GGSGSAGFQH HHNSAVVTTA 300 NGGIAAAEAS NYLDPSLFPV PRSNFMAGTQ FFPSPKSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	KHKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331913	0.0	KC331913.1 Petunia x hybrida expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788499.1	1e-152	PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
Swissprot	K4B6C9	1e-133	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	U5L3P6	0.0	U5L3P6_PETHY; Expression of terpenoids 1
STRING	XP_009788493.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-76	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]