 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf00957g02017.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 104aa MW: 11961.1 Da PI: 5.1984 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 28.2 | 6.1e-09 | 55 | 97 | 2 | 45 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeek 45
Yn+YA GF +rk +++++ rn+e+t+ f Cs+eg++++
Peinf101Scf00957g02017.1 55 AYNSYAVAKGFGIRKGAKTHN-RNNEMTRCLFLCSCEGQSAKIP 97
5****************9999.5556************998755 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.1E-6 | 55 | 96 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 104 aa Download sequence Send to blast |
MEDLNADNEL SNQDQDHNVN DKDCSTRAYN TCTINRNFVF EIGMKFDGEE ESYNAYNSYA 60 VAKGFGIRKG AKTHNRNNEM TRCLFLCSCE GQSAKIPTFE ERKR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016467903.1 | 7e-37 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| TrEMBL | A0A1S3ZUA7 | 2e-35 | A0A1S3ZUA7_TOBAC; Uncharacterized protein | ||||
| STRING | XP_009628526.1 | 9e-35 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1726 | 9 | 31 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G80010.1 | 2e-06 | FAR1-related sequence 8 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|