PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00957g02031.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 255aa MW: 29312.8 Da PI: 8.9086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00957g02031.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31	8.6e-10	69	120	38	90
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +g ++++++++ +++r+r e r+gC a++k k + +g+wev +++ H+H+++ Peinf101Scf00957g02031.1 69 KGAKTHNRNNEMTRKRQRLEYRCGCMARIKFKIS-NGTWEVCEFNDVHSHPMV 120 68888888888999****************99.*************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-7	69	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEDLNADNEL SNQDQDHNVN DKDCSTRAYN TCTINRNFVF EIGMKFDGEE ESYNAYNSYA 60 VAKGFGIRKG AKTHNRNNEM TRKRQRLEYR CGCMARIKFK ISNGTWEVCE FNDVHSHPMV 120 EENLRHFIQS GRKLTTANDV ESEEVARKYL LQAKVEITKL QSEQYVQVFD REKNTKSSTI 180 DQGSSDQILD PIKKKGKGKG NKRLKPNIEQ IKKRTSQKAS KVQVGLPHEG QSMSTMKEIT 240 DTQSSLMSQM GFNFE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	2e-50	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016467903.1	7e-56	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019266793.1	6e-55	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	2e-08	FAR1-related sequence 10