PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00962g16031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 207aa    MW: 23751.1 Da    PI: 9.0253
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00962g16031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31128186159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDg++WrKYGqK vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Peinf101Scf00962g16031.1 128 LDDGFKWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQIQRHSKDTSIVVTTYEGIHNHP 186
                               59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014472.25E-51525No hitNo description
PROSITE profilePS508356.74275155IPR007110Immunoglobulin-like domain
Gene3DG3DSA:2.20.25.802.5E-32115186IPR003657WRKY domain
SuperFamilySSF1182908.76E-28120187IPR003657WRKY domain
PROSITE profilePS5081128.219123188IPR003657WRKY domain
SMARTSM007741.9E-36128187IPR003657WRKY domain
PfamPF031068.1E-25129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MHNYSSTSMD VGEEPPPPPP PLPPPPLLSN DLSPASFFMQ PMNNNSQVIG CDNNIDWTAL  60
LSGSINNCHE PTMMPNVSIT PRNITMMEGE QQHQQHGILS CRDKGKIRKR KYVPPRIAFH  120
TRSTEDILDD GFKWRKYGQK AVKNSIHPRS YYRCTHHTCN VKKQIQRHSK DTSIVVTTYE  180
GIHNHPCEKL METLSPFLKQ LQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23116185271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-56HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224639.18e-97PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ44e-54WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A314KV162e-95A0A314KV16_NICAT; Putative wrky transcription factor 56
STRINGXP_009764262.12e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-56WRKY DNA-binding protein 56