PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00967g03002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20612.9 Da    PI: 7.2354
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00967g03002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-191570257
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              +++ ++t++q++ Le  F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k+
  Peinf101Scf00967g03002.1 15 CHKKRLTQDQVRLLEISFNSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKN 70
                              567789************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.2611171IPR001356Homeobox domain
SMARTSM003895.1E-181475IPR001356Homeobox domain
SuperFamilySSF466894.02E-181580IPR009057Homeodomain-like
PfamPF000467.8E-171670IPR001356Homeobox domain
CDDcd000861.89E-151672No hitNo description
Gene3DG3DSA:1.10.10.608.0E-201878IPR009057Homeodomain-like
PRINTSPR000315.9E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000315.9E-65167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDFFNSQTRK NHLKCHKKRL TQDQVRLLEI SFNSNNKLDS DRKSQLAQEL GLPPRQVAIW  60
YQNKRARWKN QSLEVDYKTL QQRLDNVQAD SDRLKLEVEK LREELNKSQQ ILLAFNTTTY  120
SSISSSCDEV GSSCLQLHDQ SGHHDQHNLD KELYACLIGD EGHFGTNDGH NFFASSMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RKNHLKCHKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800499.11e-107PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1J6IZQ91e-107A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
STRINGXP_009800499.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-26homeobox protein 52