PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00967g03011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 280aa MW: 32030.5 Da PI: 10.1428

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00967g03011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.2	2e-33	9	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+G++F+P+d+e++ e+L++kv +++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk Peinf101Scf00967g03011.1 9 LPAGVKFDPSDNEIL-EHLEAKVLSDThklhplI---HqfilTIDGQnGICYTHPQKLP-GVSKDGQVRHFFHRPSKAYTTGTRK 88 799*********9.99*99995554442...133333666556******.566677888************ PP NAM 75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+++ + +W++tgk+++++ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l Peinf101Scf00967g03011.1 89 RRKVHteidggETRWHKTGKTRPLFI-GGVLKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 149 744446655778**********.**********6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-37	5	168	IPR003441	NAC domain
PROSITE profile	PS51005	32.686	9	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-14	10	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
RGIQDLPGLP AGVKFDPSDN EILEHLEAKV LSDTHKLHPL IHQFILTIDG QNGICYTHPQ 60 KLPGVSKDGQ VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PLFIGGVLKG 120 YKKILVLYTN YGRQKKPEKT NWVMHQYHLG ENEEEKDGEL VISKVFYQTQ PRQGGSLNER 180 KPLDNKSRSL TRKDNPILKI TNFADYYNSS PFISYHIGIE NRDISPQLIQ NLVVHGDSSP 240 FVLPSNASKE KYESREQKQK LIKIITKEKD IWGGGGRCNV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-115	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230485.1	1e-162	PREDICTED: NAC domain-containing protein 73-like isoform X1
Refseq	XP_019230486.1	1e-162	PREDICTED: NAC domain-containing protein 73-like isoform X2
Swissprot	O49459	1e-103	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A314KJF7	1e-160	A0A314KJF7_NICAT; Nac domain-containing protein 73
STRING	XP_009797428.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]