PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00968g01003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 218aa MW: 23933.3 Da PI: 4.584

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00968g01003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.7e-09	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed++l+d++k +G g W+ +++ g Peinf101Scf00968g01003.1 14 KGAWTPMEDKILIDYIKVHGEGKWRNLPKKAG 45 79************************999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-12	5	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.41E-7	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.934	9	57	IPR017877	Myb-like domain
Pfam	PF00249	1.3E-6	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-5	16	43	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGRRPCCSKE GLNKGAWTPM EDKILIDYIK VHGEGKWRNL PKKAGSGSSL SSSASPCLVV 60 RTKAMRCTKV FIPTPKNTNH DDSITTNYNN DDTHDDDKVM AVETTTAVAS SSSSFSLSSI 120 LSEQQPISGS SPVSLSGDQF MENNFNFMFN FDMDDPFLSE LLNAAENTSA IGGDQVGDSF 180 NRNEKERSYF PPSSSQSALF SEETQHNDLE LWINGFSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254197	2e-31	AC254197.3 Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-22m10 map 12, complete sequence.
GenBank	HG975451	2e-31	HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBank	HG975524	2e-31	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019230335.1	3e-41	PREDICTED: myb-related protein 330-like isoform X1
TrEMBL	A0A314KL89	7e-40	A0A314KL89_NICAT; Anthocyanin regulatory c1 protein
STRING	XP_009602508.1	4e-38	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-13	myb domain protein 3