PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00973g04010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 180aa    MW: 19303 Da    PI: 8.4721
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00973g04010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.74.3e-152462139
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa 39
                              +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGa
  Peinf101Scf00973g04010.1 24 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGA 62
                              7*************************************7 PP
2DUF26039.12.1e-126310162100
                    DUF260  62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                               +yeA++r+rdPvyG++g i++lqqq++ l+ael+ +++e
  Peinf101Scf00973g04010.1  63 IYEANVRLRDPVYGCMGAISALQQQVQALQAELNIIRAE 101
                               7*********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.83623123IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-142462IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-106399IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGRRYMLGPP GAGSVNNMLN TITPCAACKL LRRRCAQECP FSPYFSPHEP QKFASVHKVF  60
GAIYEANVRL RDPVYGCMGA ISALQQQVQA LQAELNIIRA EIIKYKFGDG TTSSTLNIPS  120
SHLVSTLLSS GAVSVVAPPS PPPPLSLPPT SSSASMYTDQ PSTTTEFSTI SSENNISYFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-31101096118LOB family transfactor Ramosa2.1
5ly0_B2e-31101096118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755184e-44HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577136.12e-77PREDICTED: LOB domain-containing protein 15
SwissprotQ8L5T52e-51LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A1U8H0X04e-76A0A1U8H0X0_CAPAN; LOB domain-containing protein 15
STRINGcassava4.1_031813m2e-72(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-45LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]