PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00982g03006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 754aa MW: 85763 Da PI: 6.8101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00982g03006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	32	121	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 fYn+YA+++GFs+r+ + ++s+r++ i +r +vCs+eg++++e+++ +++rr+r+++rtgCka++++k+++ +gkw +tkl+++H Peinf101Scf00982g03006.1 32 FYNSYARRAGFSTRVGAYRRSRRDDAISTRILVCSMEGFTAPEDSS-KERRRQRTTSRTGCKAHMNIKRHHpSGKWAITKLVKDH 115 9*****************************************99.999******************************* PP FAR1 86 nHelap 91 nHel+p Peinf101Scf00982g03006.1 116 NHELVP 121 **86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-27	32	121	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-24	243	329	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.954	527	559	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-10	531	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.8E-9	534	561	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MEPLSLNEEE EDDDQNPYEG MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST 60 RILVCSMEGF TAPEDSSKER RRQRTTSRTG CKAHMNIKRH HPSGKWAITK LVKDHNHELV 120 PPDKVHILRS HRHISGPARS LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM 180 SQCRQKRALG SGAQSIFDYL KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG 240 DTVTFDTTGR TQRYRVPFAP FIGVNHHCQP VLFGCALLLN ESKSSFVWLF QTWLAAMSGR 300 HPVSITTDHD TIIRSAISEV FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN 360 LTETIEEFEL CWESLLGKYT LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN 420 SFFDGYIDAL TNIHVLITQY EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT 480 REMFLMFQQE LMATLAYPAA VINDTGSHVV YHVAKFGEDH KVHYVKYSVF EKKASCSCQM 540 FEFSGIPCRH ILATFRVKNV LKLPSHYVLK RWTRKAKSEI VLDEDDLGLP SSDNESFTAR 600 FEKLSLEAMK YVKEGADSKD VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL 660 NGNQADCGHS CLVSQDEKIQ ELTTAVVNAT EICEAYQAKL LSILREMEEQ KLRISLKDWM 720 CYPLAMAEDY DVTVFVYMVE LDPTLELYLG RPGN

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MEPLSLNEEE EDDDQNPYEG MEFESEQAAR VFYNSYARRA GFSTRVGAYR RSRRDDAIST  60
RILVCSMEGF TAPEDSSKER RRQRTTSRTG CKAHMNIKRH HPSGKWAITK LVKDHNHELV  120
PPDKVHILRS HRHISGPARS LIDTLQAAGW GATRIMSVLV KQSGGINNVG FTKTDCQNYM  180
SQCRQKRALG SGAQSIFDYL KQKQAEDPAF FYAVQGGSDN SSGNIFWADS TCPMNYAYFG  240
DTVTFDTTGR TQRYRVPFAP FIGVNHHCQP VLFGCALLLN ESKSSFVWLF QTWLAAMSGR  300
HPVSITTDHD TIIRSAISEV FPGTRHRFSK SSIFREAQER LSHLLQSFPT FEAEFHKCVN  360
LTETIEEFEL CWESLLGKYT LKDDQWLQSI YDAREHWVPV YLRDTFFGET SISKTSDGTN  420
SFFDGYIDAL TNIHVLITQY EKATASRHEK EVKAEYDTIN ITPSLKTPSP MEKQAANVYT  480
REMFLMFQQE LMATLAYPAA VINDTGSHVV YHVAKFGEDH KVHYVKYSVF EKKASCSCQM  540
FEFSGIPCRH ILATFRVKNV LKLPSHYVLK RWTRKAKSEI VLDEDDLGLP SSDNESFTAR  600
FEKLSLEAMK YVKEGADSKD VYQVSMDALR EASKKVAAAM CSTPSLPQSP LMNKAKEFNL  660
NGNQADCGHS CLVSQDEKIQ ELTTAVVNAT EICEAYQAKL LSILREMEEQ KLRISLKDWM  720
CYPLAMAEDY DVTVFVYMVE LDPTLELYLG RPGN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019231145.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1S3ZJB9	0.0	A0A1S3ZJB9_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]