PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01008g03023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 330aa    MW: 36630.5 Da    PI: 7.9342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01008g03023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14109160155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Peinf101Scf01008g03023.1 109 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 160
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-16107175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13107162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-13107164No hitNo description
PROSITE profilePS5088815.294108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEALSTNE LLNFIIYDTI TATPFNTNNN NLEPTSSTLL LDHHESSLLK PQTFSGSLEN  60
CSSMMLAQQQ LTETTSRREK NLAVAQGGGR KKRRRRPKVC KNKEEAENQR MTHIAVERNR  120
RKQMNEHLAV LRSLMPESYV QRGDQASIVG GAIEFVKELE HILQSLEAQK FVLLQQGGGG  180
DGEGCPNKTT TAGGTFSSPG GATEFFPTTP FAQFFSYPQY TCSQLPNKYT SKSKAAIADI  240
EVTLIETHAN VRILSRKRFR QLSKLVAAFQ SLYLSVLHLN VTTLDPLVLY SISAKVEEGC  300
QLNSADDIAG AVHHMLRIIE EETATFSYQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RKKRRRR
29095KKRRRR
3109120RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612331e-97GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018622054.11e-174PREDICTED: transcription factor bHLH71 isoform X1
SwissprotQ9C7T47e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S4ANW91e-171A0A1S4ANW9_TOBAC; transcription factor bHLH71-like
STRINGXP_009631535.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-78beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]