PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01027g00022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 187aa    MW: 21682.9 Da    PI: 4.1904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01027g00022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-091443130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              +g+WT++Ed++l+ ++++ G g+W++ ++ 
  Peinf101Scf01027g00022.1 14 KGPWTPDEDQILISYIRKNGHGNWRALPKQ 43
                              79***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-13543IPR009057Homeodomain-like
PROSITE profilePS500907.224943IPR017877Myb-like domain
SuperFamilySSF466891.22E-81049IPR009057Homeodomain-like
PfamPF002499.2E-81443IPR001005SANT/Myb domain
CDDcd001673.08E-51642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPD EDQILISYIR KNGHGNWRAL PKQADTIIQS HEMLGNSDTQ  60
KIINSPQHSS SEISTVTAES VVMTQSQAIN DHDQMMIKHE EMESSEYFPE IDESFWTDEL  120
STDNNCNHVM TAGNEIATHF NDEESRVPFS RVREENVDML TTRMEDDMDF WYNEFIKTDD  180
LQELPEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286501e-38AB028650.1 Nicotiana tabacum mRNA for myb-related transcription factor LBM2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312384.11e-64myb-related protein Myb4-like
RefseqXP_009802252.11e-64PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U7YDQ03e-63A0A1U7YDQ0_NICSY; myb-related protein Myb4-like
TrEMBLQ9SLT13e-63Q9SLT1_TOBAC; Myb-related transcription factor LBM2
STRINGXP_009802252.15e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-24myb domain protein 14