PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01086g01011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 109aa    MW: 12554.4 Da    PI: 10.912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01086g01011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13e-08731126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                              ykt+lC  f++ G C++  +C+FaHg
  Peinf101Scf01086g01011.1  7 YKTKLCVLFQQRGRCPR-QSCSFAHG 31
                              9****************.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.972633IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027632IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-12637IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-7636IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MGERKLYKTK LCVLFQQRGR CPRQSCSFAH GNAELRRFSD DSVPGRRDFR GRDLREKLDR  60
RRSPVGRYTA DRDARERKAS HGQSLLLSLL FCCCPNLVNL SSCSTGTMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016439563.12e-39PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_016439564.12e-39PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1
RefseqXP_016439567.11e-39PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X3
SwissprotQ93XW71e-13C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLA0A1S3XI905e-38A0A1S3XI90_TOBAC; zinc finger CCCH domain-containing protein 13-like isoform X1
TrEMBLA0A1S3XIR62e-38A0A1S3XIR6_TOBAC; zinc finger CCCH domain-containing protein 13-like isoform X3
STRINGXP_009630376.11e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-15C3H family protein