PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01117g10019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 23087.3 Da    PI: 6.7085
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01117g10019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.91.9e-26959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ie  s rqvtfskRr+g++KKA ELS+LCda+v +i+fsstgkly ++s
  Peinf101Scf01117g10019.1  9 KKIEKISSRQVTFSKRRAGLFKKADELSILCDAQVGIIVFSSTGKLYKFAS 59
                              689999*******************************************86 PP
2K-box22.16.4e-09981374887
                     K-box  48 lkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               +  LqqLe+qL +++ +i++kK+++lle +e++  + +el
  Peinf101Scf01117g10019.1  98 VAKLQQLEHQLTEGILSIKNKKEQILLELLEKSSLQIEEL 137
                               568*************************999877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
CDDcd002651.57E-39278No hitNo description
SuperFamilySSF554551.18E-29291IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKLEMKK IEKISSRQVT FSKRRAGLFK KADELSILCD AQVGIIVFSS TGKLYKFASP  60
KSSMEKIVYR YNSVPDSSDH DTVENVAEPE LDALKTEVAK LQQLEHQLTE GILSIKNKKE  120
QILLELLEKS SLQIEELGHS SGNHHPESHH AARKNSGGSS TLLCDCKSDG EGDSDTCLRL  180
GLTVATSHEK KIPKIECTCN DCESPMVLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18189187MEF2C
5f28_B4e-18189187MEF2C
5f28_C4e-18189187MEF2C
5f28_D4e-18189187MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055410.11e-104MADS-box transcription factor 23
TrEMBLA0A0V0HGQ21e-101A0A0V0HGQ2_SOLCH; Putative agamous-like MADS-box protein AGL18-like
STRINGSolyc10g080030.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-29AGAMOUS-like 44