PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01118g04012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 237aa MW: 26684.9 Da PI: 8.2214

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01118g04012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.9	4.6e-30	67	154	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Yn+YA +vGF vr+++ +ks rnge ++r++vC+keg+++++ ++ ++++++r++tr gCka++ vkke++gkw+v+kl++eHn Peinf101Scf01118g04012.1 67 YYNAYAARVGFIVRVDAFRKSMRNGERVWRRLVCNKEGFSKRKGNQ-SDKKKRRSVTREGCKAMIIVKKEQSGKWVVAKLVKEHN 150 8***************************************9999.99999***************************** PP FAR1 87 Hela 90 H+l+ Peinf101Scf01118g04012.1 151 HPLV 154 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-28	67	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MVESSSGKEG TSNDVDAEEG RLNMEMGMVE SSSGKELTSN DGEAEGRSNM EPYEGMEFES 60 EEAAKAYYNA YAARVGFIVR VDAFRKSMRN GERVWRRLVC NKEGFSKRKG NQSDKKKRRS 120 VTREGCKAMI IVKKEQSGKW VVAKLVKEHN HPLVAAPANT HRGAIFSQTP DEKDVKIQEL 180 TAELQKERKR SAALQEQLDF VLKDMEDHSE QLTRNINDIV HSVRELDSRK VVSSNGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	118	KKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802876.1	1e-126	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_009802877.1	1e-126	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_016509498.1	1e-126	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4D830	1e-125	A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7YFJ1	1e-125	A0A1U7YFJ1_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A1U7YLL2	1e-125	A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRING	XP_009802876.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-73	FAR1 family protein