PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01118g05007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 212aa MW: 24754.5 Da PI: 7.3817

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01118g05007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	50	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r+tr++ r gCka++ vk +k++kw+vt++++eH Peinf101Scf01118g05007.1 50 EFYDDYARRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHYGPPRKTRTSPREGCKAMMLVKINKSDKWVVTRFVKEH 134 6******************************************999********************************* PP FAR1 86 nHela 90 +H+l+ Peinf101Scf01118g05007.1 135 THPLV 139 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	50	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
KHCLVVTVDL EARAATIDCT VESRDVACED NVIREPFIGM EFESEEAAKE FYDDYARRVG 60 FIMRIDQCRR SEVDKRILSR RLSCNKQGYY VKMKNHYGPP RKTRTSPREG CKAMMLVKIN 120 KSDKWVVTRF VKEHTHPLVV SACSSHNAMD KKDRRIQELV MELEHQDKLC DLYKEQLCTL 180 LENVEQQMEL LSNKIEVVVN NVKEIEAEVQ KP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455342.1	1e-136	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016455343.1	1e-136	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3YTJ7	1e-134	A0A1S3YTJ7_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009626414.1	1e-134	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-60	FAR1 family protein