 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf01141g00013.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 247aa MW: 27568.1 Da PI: 5.3567 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.3 | 5.6e-13 | 97 | 144 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ + f L +++P + kKl+K++iL ++eY+k+Lq
Peinf101Scf01141g00013.1 97 QDHVAAERNRREKMSQLFISLSKVVPGL-----KKLDKSSILGDTIEYMKELQ 144
6799************************.....9******************9 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.294 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.6E-10 | 97 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 98 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 7.61E-17 | 99 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.54E-12 | 99 | 148 | No hit | No description |
| SMART | SM00353 | 4.4E-14 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence Send to blast |
MAYSTGFNLQ EDDFFDFMQN LSTPSYTIQE KALSSDHPLT SSSGFLISFG SSSLNPAVIS 60 EEEEDIALMI NSHLDESAYQ ESRGNNTIYK RTPLQAQDHV AAERNRREKM SQLFISLSKV 120 VPGLKKLDKS SILGDTIEYM KELQEQVKVL EEIKQKIPSP CQKSGSSSSS KESVNGSNQV 180 VGSNIKARIS NKSVLINIHC NKEDGMVERV LSQMEQLHLA VHDIRIMPFG LMNLDISILA 240 EVNFPNH |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009768662.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
| Refseq | XP_016472308.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
| TrEMBL | A0A1S4A6N7 | 8e-88 | A0A1S4A6N7_TOBAC; transcription factor bHLH18-like | ||||
| TrEMBL | A0A1U7VKZ0 | 8e-88 | A0A1U7VKZ0_NICSY; transcription factor bHLH18-like | ||||
| STRING | XP_009768662.1 | 1e-88 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA8864 | 16 | 28 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G22760.1 | 6e-27 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|