PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01142g10041.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 240aa MW: 27005.5 Da PI: 6.2647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01142g10041.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.4e-06	36	88	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L + l +++ + Ka+iL +A +++k++ Peinf101Scf01142g10041.1 36 KRIHKAEREKLKREHLNELFLSLADALELsE---QNQQtNGKASILGEAARFVKDM 88 688899*********************54...666669********999975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.26E-10	26	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.06E-6	33	93	No hit	No description
PROSITE profile	PS50888	11.503	35	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-4	36	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-6	36	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.007	41	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDSESPAPVF DKGATDVETS LDGSHHGKKN PRKVPKRIHK AEREKLKREH LNELFLSLAD 60 ALELSEQNQQ TNGKASILGE AARFVKDMLS QIKHLRTENT TLLSESQYLS VEKKELQDEK 120 SALEAEIFKL QSEVKAREAE TILDLNLAPP ESQLREFASQ NNFMTASEHA FQQSQIMNPV 180 YVLPLNSNPQ SYPAPDAAMA MPTSTVKKPR ARYPTPADVW PSQIFEKRPR LLGQEIQDSA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ423077	1e-174	DQ423077.2 Petunia axillaris subsp. parodii cultivar TA3310 DNA-binding protein (At3g47640) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364187.1	1e-134	PREDICTED: transcription factor bHLH47
Swissprot	Q9SN74	1e-45	BH047_ARATH; Transcription factor bHLH47
TrEMBL	M0ZIT3	1e-132	M0ZIT3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400001617	1e-133	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-48	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]