PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01145g02005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 199aa    MW: 22137.3 Da    PI: 8.4046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01145g02005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26032.13.3e-104066127
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqp 27
                              +CaaCk+lrr+C+++Cvlapyfp ++p
  Peinf101Scf01145g02005.1 40 PCAACKILRRRCVHKCVLAPYFPPTEP 66
                              7*********************99875 PP
2DUF26053.95.3e-176511550100
                    DUF260  50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                               ++ +r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+aela++++e
  Peinf101Scf01145g02005.1  65 EPLKRADAVNSMVYEANARIRDPVYGCAGAICQLQKQINELQAELAKAQAE 115
                               5678*******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.70339148IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-84066IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-1566113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MECSDKTTFI TLTSSSHSSS SSASARSTPP SSPPPGIMTP CAACKILRRR CVHKCVLAPY  60
FPPTEPLKRA DAVNSMVYEA NARIRDPVYG CAGAICQLQK QINELQAELA KAQAEMLNVK  120
CQNANLVELI CMKMSQDKEN NRSISPDHNG QQSYGNTSIF LEDTSVSYCE SKLTSNPNLF  180
SVKLEIRHRQ WYKAMYTYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-28351216116LOB family transfactor Ramosa2.1
5ly0_B2e-28351216116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485630.13e-70PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-44LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S4B9N07e-69A0A1S4B9N0_TOBAC; LOB domain-containing protein 1-like
STRINGXP_009588230.18e-69(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2008933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-38LOB domain-containing protein 1