PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01164g03020.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WOX

Protein Properties

Length: 257aa MW: 28035 Da PI: 4.8745

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01164g03020.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.7e-16	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Peinf101Scf01164g03020.1 28 RSRWNPKPEQILILESIFNSgMVNPPKEETVRIRKVLeqfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-9	5	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-13	22	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.37	24	89	IPR001356	Homeobox domain
SMART	SM00389	2.6E-6	26	93	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEDEAQDHSS SSNSSQSNST PERNEPVRSR WNPKPEQILI LESIFNSGMV NPPKEETVRI 60 RKVLEQFGAV GDANVFYWFQ NRRSRSRRRQ RQIQASQLSV GDQQTRCSTS TGCGAIQFDM 120 INTGPSSSFS SFPMVAAPSN CLALASSSSS SSCGVVGNAN DGLYSFPVQT AGLPEIEQNS 180 SILCSPTDNA NSLHYQLGNT TVYINGVATE VPRGPIDMKA MFGQEDLALY HSSGVPVPVN 240 EYGFILQSLQ QGESYFL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609299.2	1e-107	PREDICTED: WUSCHEL-related homeobox 11 isoform X2
Swissprot	Q6X7J3	2e-63	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2S1B7G5	1e-106	A0A2S1B7G5_TOBAC; WOX11
STRING	XP_009609298.1	1e-104	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	4e-34	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]