PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01166g04034.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRF
Protein Properties Length: 183aa    MW: 20563.4 Da    PI: 8.7469
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01166g04034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.31.1e-2297140144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               +aep+rCrRtDGKkWRCs+ v++++k+CE+H+hrgr+ +rk+++
  Peinf101Scf01166g04034.1  97 EAEPRRCRRTDGKKWRCSKGVVQNHKYCEKHMHRGRHHTRKHVK 140
                               58****************************************97 PP
2QLQ44.93.6e-163670337
                       QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              FT  Q q+L++Q+ +yKy+ a++PvP++L+ +i+k
  Peinf101Scf01166g04034.1 36 FTFLQRQELEQQLFIYKYIEAGLPVPSHLIIPICK 70
                              9999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.5E-43470IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.4893570IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-113669IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.42297141IPR014977WRC domain
PfamPF088792.8E-1798139IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
SNGDGLLELG LNLELSQHGG NHECCYSKFS TSEYGFTFLQ RQELEQQLFI YKYIEAGLPV  60
PSHLIIPICK SIVCSIKGLH DTIGYGSLCL DFKSGTEAEP RRCRRTDGKK WRCSKGVVQN  120
HKYCEKHMHR GRHHTRKHVK PASSNMQLSS STSKSISTTI ELARVHQNSE LDATSFSIAL  180
PIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586881.13e-74PREDICTED: growth-regulating factor 10-like
SwissprotQ6AWX75e-42GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A2G3AE893e-73A0A2G3AE89_CAPAN; Growth-regulating factor 10
STRINGXP_009586881.11e-73(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-27growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]