PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01168g03006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26832.6 Da    PI: 9.3642
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01168g03006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.53.6e-181050242
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Peinf101Scf01168g03006.1 10 FITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                              89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.156149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-24185IPR002100Transcription factor, MADS-box
CDDcd002663.71E-22285No hitNo description
PRINTSPR004047.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.4E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSSRKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEVWPN  60
TMGAQRVLAE FKKMPEMEQS KKMVNQESFI RQRIAKASEQ LKKQSKENRE KEMTEVMYQC  120
LTGKGLQNLN LGDLNDLGWV VDQNLKEIYK RIEDLKKGAS TSSQAAVTAP VEQKPVVELG  180
LEGMQQRTQA EWFTDWMNNT STSDQHIGFG HGDEMIIPNF NDNHNTSVWS NGFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685100.0FJ168510.1 Petunia x hybrida type I MADS box transcription factor (MADSy5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774462.11e-144PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLB6DT621e-158B6DT62_PETHY; Type I MADS box transcription factor
STRINGXP_009774462.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-60AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]