PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01171g02036.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

YABBY

Protein Properties

Length: 181aa MW: 20318.3 Da PI: 7.9489

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01171g02036.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.8	4.5e-61	6	165	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCtsllsvnl+kas + hl sl+e+ + + +v++e++ n Peinf101Scf01171g02036.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSLLSVNLMKASLV---PLHLFASLNETEHPKPEVDKEETGAN 87 678999*********************97369************999854...23444444444444555555555554 PP YABBY 86 vekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++k+ +++ + s++e++++ +v p v++PPekrqr+Psayn+fik+ei+r+k+ P+++h++afs+aaknWahfP+ Peinf101Scf01171g02036.1 88 NKKSADSKSP--F-MTSSDEEDQLENVLPvVNKPPEKRQRAPSAYNCFIKDEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 165 4443333322..2.22444444444444449***********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-59	11	165	IPR006780	YABBY protein
SuperFamily	SSF47095	1.24E-8	112	168	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	117	168	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSTLDHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSL LSVNLMKASL 60 VPLHLFASLN ETEHPKPEVD KEETGANNKK SADSKSPFMT SSDEEDQLEN VLPVVNKPPE 120 KRQRAPSAYN CFIKDEIKRL KTIYPNMTHK QAFSTAAKNW AHFPPSQQRE SCSLGDRKMP 180 K

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621066.1	1e-111	PREDICTED: axial regulator YABBY 4 isoform X1
Refseq	XP_016511953.1	1e-111	PREDICTED: axial regulator YABBY 4-like isoform X1
Refseq	XP_019228973.1	1e-111	PREDICTED: axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	7e-62	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4DF36	1e-110	A0A1S4DF36_TOBAC; axial regulator YABBY 4-like isoform X1
STRING	XP_009621066.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	3e-64	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]