PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01172g02034.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 225aa    MW: 25730.7 Da    PI: 10.1151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01172g02034.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-131121741583
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               +l lp +f++++   ++++ t+tl de+g++W   +  +k++    l++GWk+F+ +++L +gD +v  
  Peinf101Scf01172g02034.1 112 ILGLPSTFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKSG----LSGGWKKFAVDHDLADGDAIVYI 174
                               588******9995..346679***************555555....9******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.6698190IPR003340B3 DNA binding domain
SMARTSM010193.4E-9102190IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14111174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-13112175IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-15113184No hitNo description
PfamPF023623.9E-10113173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVVSTKKVKY EELRQQRLEE NKKRMEQLNL PLLSQALKNS SSPKPSPMKK VKPRILRTEL  60
VVYYEKVMIP RRVATPRKRD LSNRVYASDE QREAAIEKAE KLEASLGSDY PILGLPSTFC  120
RKNLPRRDDT ITLIDETGEE WPTVYLAQKS GLSGGWKKFA VDHDLADGDA IVYIIRVFTM  180
LVRVQVLKPP QIRVYLQSSS TGAFQCPGGN GKHDHIYATR DNWTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783454.14e-99PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_016434462.14e-99PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-50Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A1S3X3J59e-98A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like
TrEMBLA0A1U7X9509e-98A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like
STRINGXP_009783454.11e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-42B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]