PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01179g02021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 340aa    MW: 37933.6 Da    PI: 10.1868
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01179g02021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31268325359
                               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Peinf101Scf01179g02021.1 268 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHS 325
                               99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-18216264IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-33254325IPR003657WRKY domain
PROSITE profilePS5081130.699261327IPR003657WRKY domain
SuperFamilySSF1182904.71E-27263325IPR003657WRKY domain
SMARTSM007746.6E-38266326IPR003657WRKY domain
PfamPF031063.3E-27268324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAVDLMSSGY QSNNFSSNME EKAVQEAANA GLQSVEKLIR LLSQSHQQNQ QQQQKFQDSP  60
DYQEVAEVAV NKFKKFISLL DNKNRTGHAR FRRGPITNTP FKNQPQKLQT QQPPQQQQQK  120
IDQKPIEEKE KSHTKNYCPT PIQRLPPLPN NHHQLVKNGL KESSTTINFA TPSPANSFIS  180
SLTGDTEQSL SSGFQITNLS NVSSAGRPPL STSSFKRKCN SLDDSSLKCS SAGGSSGRCH  240
CPKKRKSRVK RVVRVPAISM KMADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA  300
RKHVERALDD PAMLIVTYEG EHNHSHSISE TPAPHVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21254324271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415201e-157AB041520.1 Nicotiana tabacum mRNA for WRKY transcription factor NtEIG-D48, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074398.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-101WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA7UGC90.0A7UGC9_SOLTU; WRKY transcription factor 2
STRINGSolyc04g078550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-87WRKY DNA-binding protein 7