PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01186g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 689aa    MW: 78007.5 Da    PI: 5.6226
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01186g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.53.9e-1093106822374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfs 85 
                               + lL++cA+a++s d++ a++lL r+++++sp+gd ++Rl +y+++AL+arl++ +++ +y a+++s+ s    ++ l+a+k++ 
  Peinf101Scf01186g00006.1 310 RGLLTQCAQALASYDTRTANELLMRIRQHSSPHGDGTERLGHYLANALEARLSGlTGTACYTAFASSRIS---AARILKAYKMLI 391
                               679***************************************************8999999999998888...99********** PP

                      GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                +sP+   s++ aN+ I + v g   r+HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g   +e++e tg+rL+k
  Peinf101Scf01186g00006.1 392 TASPFKLTSNIFANKYIRKLVIGGaPRIHIIDFGILYGFQWPCLIQGLSLRPGGPPELRITGIELPQPGfrPAERVEDTGRRLEK 476
                               *******************986655*******************************************9**************** PP

                      GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               ++++++vpf f++ +ak++e++++eeL+++++E+l+Vn+ ++l +++de+v  +s+rd+vL+l+++++P+++++   +  +n++ 
  Peinf101Scf01186g00006.1 477 YCKRFNVPFVFKA-IAKKWESITVEELEIDRDEVLVVNSLYRLGNIPDETVVPDSPRDAVLDLIRRIRPDLFIHGVLNGTYNTPF 560
                               *************.7********************************************************************** PP

                      GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                               F++rf eal ++s+lfd++ea+l+re+e+r+  E+e+++r+++nv+aceg+er+er et+++W+ r ++aGF+++pl+++++k +
  Peinf101Scf01186g00006.1 561 FVTRFREALFHFSSLFDMFEATLSRENEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCTRAGFRQLPLDQEIVKLV 645
                               ************************************************************************************* PP

                      GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +  +r  + + ++v+e+ +++++gWk+r ++++S+W+
  Peinf101Scf01186g00006.1 646 SNKVRSDYHKDFSVDEDGHWMLQGWKGRVMYALSCWK 682
                               ******99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.11283662IPR005202Transcription factor GRAS
PfamPF035141.3E-106310682IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
METALVQAQD SFIFRHLSFP LLDPRKDLEQ NGSSTTLFNH PSFEEYPVLS NVSGDSGGSG  60
NPQEEEEKDH SDAMLKYITQ MLMEEDDLEK KPCMYHDCMA VQAAEKYFSN VLNGSEENNL  120
IMDSSSSHLT SSSPDSIDEF SPGFESPESH LQSLKSLSDG VSYGLQLDPH HDDSFLTSFH  180
YPFGNDQFDQ EGGEAANLFQ SESNHSPSGS REKKNRHRQD DDDDAAADQR RSNKQLAATF  240
ADESEPLEMY DEVLLCLNNP YVEHNITTTT TTTTVISGCS PDEAKKTTKG RPRGGRKHGS  300
NKKKDMVDLR GLLTQCAQAL ASYDTRTANE LLMRIRQHSS PHGDGTERLG HYLANALEAR  360
LSGLTGTACY TAFASSRISA ARILKAYKML ITASPFKLTS NIFANKYIRK LVIGGAPRIH  420
IIDFGILYGF QWPCLIQGLS LRPGGPPELR ITGIELPQPG FRPAERVEDT GRRLEKYCKR  480
FNVPFVFKAI AKKWESITVE ELEIDRDEVL VVNSLYRLGN IPDETVVPDS PRDAVLDLIR  540
RIRPDLFIHG VLNGTYNTPF FVTRFREALF HFSSLFDMFE ATLSRENEDR KLFEEEVFAR  600
DAMNVIACEG TERVERPETY KQWQLRCTRA GFRQLPLDQE IVKLVSNKVR SDYHKDFSVD  660
EDGHWMLQGW KGRVMYALSC WKPTRLRSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4031568325380Protein SCARECROW
5b3h_A2e-4031568324379Protein SCARECROW
5b3h_D2e-4031568324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4499400.0DQ449940.1 Nicotiana tabacum GRAS1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538732.10.0PREDICTED: scarecrow-like protein 14 isoform X1
SwissprotQ9XE581e-175SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G3AXQ40.0A0A2G3AXQ4_CAPCH; Uncharacterized protein
STRINGSolyc01g100200.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-168SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]