PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01186g01021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 142aa    MW: 15829.6 Da    PI: 10.3515
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01186g01021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-191952134
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                              C+ C+ttkTplWR gp g+k+LCnaCG++yrk++
  Peinf101Scf01186g01021.1 19 CTDCKTTKTPLWRLGPLGPKSLCNACGIKYRKNK 52
                              ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.5731368IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-121357No hitNo description
SMARTSM004012.0E-151365IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-161752IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.96E-131865No hitNo description
PROSITE patternPS0034401944IPR000679Zinc finger, GATA-type
PfamPF003203.4E-171952IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDPTQKEDSS ANDENTKSCT DCKTTKTPLW RLGPLGPKSL CNACGIKYRK NKSFKGVVEK  60
KKNEISCNTT SSDKDKIGNG KDGKLCKELR LRLMMLGKEV VILQRQRSSV MKKPRIYRKK  120
IGEVEQAALL LMALSCGNSV FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788710.14e-58PREDICTED: GATA transcription factor 17-like
RefseqXP_016454370.14e-58PREDICTED: GATA transcription factor 17-like
TrEMBLA0A1S3YQX29e-57A0A1S3YQX2_TOBAC; GATA transcription factor 17-like
TrEMBLA0A1U7XQE49e-57A0A1U7XQE4_NICSY; GATA transcription factor 17-like
STRINGXP_009788710.11e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-20GATA transcription factor 15