PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01190g02023.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YC

Protein Properties

Length: 399aa MW: 45789 Da PI: 4.4561

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01190g02023.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.1	1.1e-19	2	64	37	99
NF-YC 37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +m+s ++ vll+ka e+fileltlr+w++ae+ krrtl++ dia+a+ + + +fl ivp + Peinf101Scf01190g02023.1 2 QMVSGHSTVLLAKASEVFILELTLRAWMQAEQVKRRTLQRYDIAKAIRSEELLNFLCGIVPLQ 64 79*********************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-16	2	62	IPR009072	Histone-fold
Pfam	PF00125	4.6E-8	2	49	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	2.51E-12	2	67	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MQMVSGHSTV LLAKASEVFI LELTLRAWMQ AEQVKRRTLQ RYDIAKAIRS EELLNFLCGI 60 VPLQSFKVDL CVFKSSIMTS QDELIVSKEA NYGQENEVHP AYQLVQPNNI PFQFQVEVGA 120 NGGLGNEFQP AYQMVQLDNI PLQYQFQVEK DTNDGQRNER HLAYQMVQPN NTPVQYQFQV 180 EEEANRGQGN DIHPAYQMVR PDNVPLQYQF QVEEEANRGQ GNEIHPAYQM VRPDNVPLQY 240 QFQVEEEANR GQGNEIHPAY QMVRPDNVPL QYQFQVEEEA NRGQGNEIHP AYQMVRPDNV 300 PLQYQFQVEE EANRGQGNEI HPAYQMVRPD NVPVKEETKD GQGNEFHPAY QMVQPNNIPD 360 SFISLQGIPA QLMLPSLFNS SPEAEFSING TTPHKEERL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MQMVSGHSTV LLAKASEVFI LELTLRAWMQ AEQVKRRTLQ RYDIAKAIRS EELLNFLCGI  60
VPLQSFKVDL CVFKSSIMTS QDELIVSKEA NYGQENEVHP AYQLVQPNNI PFQFQVEVGA  120
NGGLGNEFQP AYQMVQLDNI PLQYQFQVEK DTNDGQRNER HLAYQMVQPN NTPVQYQFQV  180
EEEANRGQGN DIHPAYQMVR PDNVPLQYQF QVEEEANRGQ GNEIHPAYQM VRPDNVPLQY  240
QFQVEEEANR GQGNEIHPAY QMVRPDNVPL QYQFQVEEEA NRGQGNEIHP AYQMVRPDNV  300
PLQYQFQVEE EANRGQGNEI HPAYQMVRPD NVPVKEETKD GQGNEFHPAY QMVQPNNIPD  360
SFISLQGIPA QLMLPSLFNS SPEAEFSING TTPHKEERL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	1e-14	1	62	57	118	HapE
4g92_C	1e-14	1	62	57	118	HapE
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015169097.1	1e-139	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X3
TrEMBL	A0A1S4C214	1e-101	A0A1S4C214_TOBAC; nuclear transcription factor Y subunit gamma-like isoform X5
STRING	XP_009594862.1	6e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13918	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-18	nuclear factor Y, subunit C1