PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01192g02062.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 223aa    MW: 25799.6 Da    PI: 4.062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01192g02062.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.5e-1920110187
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfv 80 
                               f+k+l +sdv++++r+v+pkk ae++  +++ +e++ +t+ d +g  +W+++++y  +++s++yvl+ ++ +Fv+ +gL++gD +
  Peinf101Scf01192g02062.1  20 FDKQLQNSDVSSLRRIVVPKKAAERYlpNLEIKEGFPITMDDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFVQTHGLRQGDYF 103
                               89**************************555557888********9*********888899999999.***************** PP

                               EEEE-SS CS
                        B3  81 vFkldgr 87 
                                ++++++
  Peinf101Scf01192g02062.1 104 ALHYNDQ 110
                               *998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.28E-2118107No hitNo description
SuperFamilySSF1019362.62E-2018113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-2418113IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-1620110IPR003340B3 DNA binding domain
SMARTSM010195.0E-1520122IPR003340B3 DNA binding domain
PROSITE profilePS508639.37520122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MWWDSQFDMA LEPTGFRFLF DKQLQNSDVS SLRRIVVPKK AAERYLPNLE IKEGFPITMD  60
DMDGIHVWSF RYRYWPNNSS RMYVLENTGD FVQTHGLRQG DYFALHYNDQ KQIYGIEARK  120
AGNGSVFSGY EAEDMILTDY AQAADDGNGV LLNEGELDMS NFYFPAMDNE MGMSFIYDTS  180
FWNEPAFDFV GGPMTYYSTN VFPMPSFGSI EDSFSVDDFY DRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A4e-47161221107B3 domain-containing transcription factor FUS3
6j9b_D4e-47161221107B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156007e-34AC215600.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0098J01, complete sequence.
GenBankHG9755147e-34HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599643.11e-151PREDICTED: B3 domain-containing transcription factor FUS3
RefseqXP_009800270.11e-151PREDICTED: B3 domain-containing transcription factor FUS3
RefseqXP_016455551.11e-151PREDICTED: B3 domain-containing transcription factor FUS3-like
TrEMBLA0A1S3YTI41e-150A0A1S3YTI4_TOBAC; B3 domain-containing transcription factor FUS3-like
TrEMBLA0A1U7YN451e-149A0A1U7YN45_NICSY; B3 domain-containing transcription factor FUS3
STRINGXP_009800270.11e-150(Nicotiana sylvestris)
STRINGXP_009599643.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-53B3 family protein