PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01192g03020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 209aa    MW: 23825.8 Da    PI: 8.6047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01192g03020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000465779123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C +C++ F ++  L  H++ H
  Peinf101Scf01192g03020.1 57 FSCLYCSRKFCTSQALGGHQNAH 79
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.17E-55484No hitNo description
PROSITE profilePS5015710.975784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADPSLVYDF WNQSSNFSAT PTEMMMSETN ISLDQQQLVP NIPIPKPKPK VQSSRTFSCL  60
YCSRKFCTSQ ALGGHQNAHK RERAASRRTM FPTSHDSDHN MVRFHFVQNN DMKEPNNLMN  120
NPLIEQNIID INLNNHSTTT NTTTYPYSTT SYCSYQTVVP ASSNNNLMMN PFVSSSHEIY  180
YPSPPNVGMR SWGLGMEERK GIETVKQKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254803.18e-54PREDICTED: zinc finger protein 6-like
TrEMBLA0A1J6JKC02e-52A0A1J6JKC0_NICAT; Zinc finger protein knuckles
STRINGXP_009800278.17e-46(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-15C2H2 family protein