PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01199g00013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 385aa    MW: 45295.1 Da    PI: 5.4015
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01199g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.72.4e-30771692103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F+ k+ye+l d ++++lisws+ng+sf++ d+++fa ++Lp++F+h+n++SF+ QLn YgF+k++ ++          eF+h++F
  Peinf101Scf01199g00013.1  77 FVLKIYEMLADVQFNSLISWSRNGTSFIINDHHQFAAQLLPRFFRHNNISSFICQLNSYGFRKINWDK---------FEFQHEWF 152
                               9****************************************************************999.........67****** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               +kgk + l++ikrk+ +
  Peinf101Scf01199g00013.1 153 QKGKGQWLKNIKRKSAK 169
                               **************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-3873166IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-2773166IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-2974166IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-1477100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2677166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-14115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-14128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEADKGKNKM TIDIGESWYE ELKDVNFDIS MLEDDNQQIQ GDNRNNEVLH GNTATNAHDN  60
GFTTASRRNF QRRPCPFVLK IYEMLADVQF NSLISWSRNG TSFIINDHHQ FAAQLLPRFF  120
RHNNISSFIC QLNSYGFRKI NWDKFEFQHE WFQKGKGQWL KNIKRKSAKK TQGQGEGQQE  180
QQGINEMAAL TMEKEMEEIR EEQLEMKEQI VMLQQQLDIL EKEMEEITRQ ARKDMSYKKA  240
KMLMLLESFF ECKAKQSDEM DDGGEERASG DRGGKGKRKV GEELKEKNER NKKIATDFES  300
DSNLRKMLID EMNMNNLAQE QPDNFMESDA LAETRSQASH FWTWHWSLTI TECFSLKTIG  360
RGYWVIPVAF YYTHEKMMVP EDLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-217716629129Heat shock factor protein 1
5d5v_B3e-217716629129Heat shock factor protein 1
5d5v_D3e-217716629129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790212.11e-133PREDICTED: heat stress transcription factor A-7b-like
TrEMBLA0A1J6IKK01e-132A0A1J6IKK0_NICAT; Heat stress transcription factor a-6a
STRINGXP_009790212.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.19e-29HSF family protein