PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01200g03007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 536aa MW: 58740.8 Da PI: 6.8342

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01200g03007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88	8.2e-28	298	360	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE....EEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk....versaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+ v+r+aed +++++tYeg+Hnh+ Peinf101Scf01200g03007.1 298 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQvfiyVQRCAEDRTILITTYEGTHNHP 360 7*********************************955555******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-30	282	362	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-25	290	362	IPR003657	WRKY domain
PROSITE profile	PS50811	26.234	292	362	IPR003657	WRKY domain
SMART	SM00774	7.9E-32	297	361	IPR003657	WRKY domain
Pfam	PF03106	9.0E-25	299	360	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MDKGWGLTLE NSSDNKVGFF KNKSVFGFNL SPRLNHINAG GDMFSDDKRD MVNEVDFFSE 60 KKNIHDVVVK KENSHGDDNN TMRTDLVMNT GLQLVTANTG SDQSTVDDGF SSEAEDKRAK 120 NELAQLQVEL ERMNVENQRL KGMLTQVSNN YSALQMHLVA LMQQQQQQQL ISRTESTHDH 180 EVVEVKSEEK KQEKDGTIVP RQFLELGPSG AKVDPMHELS HSHSSSEERT LSGSPRNNMD 240 LSRDKGIGRE ESPESESWVP NKVPKLNSSS KPVEQATEAT MRKARVSVRA RSEAPMISDG 300 CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVFIYVQ RCAEDRTILI TTYEGTHNHP 360 LPPAAMAMAS TTSAAANMLL SGSMPSADGL MNTNFLARTI LPCSSNMATI SASAPFPTVT 420 LDLTQNPNNA LPINYHQRTP SSNQFQVPLP PGLNHPNFIG SMSSPQMPQV LGQALYNQSK 480 FSGLQVSEGS NHHSFSDTLT AATAAITADP NFTAALAAAI SSIIGGSHQN NANNIP

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MDKGWGLTLE NSSDNKVGFF KNKSVFGFNL SPRLNHINAG GDMFSDDKRD MVNEVDFFSE  60
KKNIHDVVVK KENSHGDDNN TMRTDLVMNT GLQLVTANTG SDQSTVDDGF SSEAEDKRAK  120
NELAQLQVEL ERMNVENQRL KGMLTQVSNN YSALQMHLVA LMQQQQQQQL ISRTESTHDH  180
EVVEVKSEEK KQEKDGTIVP RQFLELGPSG AKVDPMHELS HSHSSSEERT LSGSPRNNMD  240
LSRDKGIGRE ESPESESWVP NKVPKLNSSS KPVEQATEAT MRKARVSVRA RSEAPMISDG  300
CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVFIYVQ RCAEDRTILI TTYEGTHNHP  360
LPPAAMAMAS TTSAAANMLL SGSMPSADGL MNTNFLARTI LPCSSNMATI SASAPFPTVT  420
LDLTQNPNNA LPINYHQRTP SSNQFQVPLP PGLNHPNFIG SMSSPQMPQV LGQALYNQSK  480
FSGLQVSEGS NHHSFSDTLT AATAAITADP NFTAALAAAI SSIIGGSHQN NANNIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	284	364	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250512.1	0.0	PREDICTED: probable WRKY transcription factor 31 isoform X2
Swissprot	Q9C519	1e-162	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A1S3Z416	0.0	A0A1S3Z416_TOBAC; probable WRKY transcription factor 31 isoform X2
TrEMBL	A0A1U7WGI9	0.0	A0A1U7WGI9_NICSY; probable WRKY transcription factor 31 isoform X2
STRING	XP_009776375.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-129	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]