PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01214g04036.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 492aa    MW: 54321.6 Da    PI: 7.0732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01214g04036.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31207262359
                               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               DgynWrKYGqK+vk se+prsYY+Ct+ +Cpvkkkvers  d++++eitY+g+Hnhe
  Peinf101Scf01214g04036.1 207 DGYNWRKYGQKMVKTSECPRSYYKCTHLKCPVKKKVERSI-DGHITEITYKGHHNHE 262
                               9***************************************.***************7 PP
2WRKY103.61.1e-32379437159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk v++tYeg+Hnh+
  Peinf101Scf01214g04036.1 379 LDDGFKWRKYGQKVVKGNHHPRSYYRCTYPGCNVRKHVERASADPKSVVTTYEGKHNHD 437
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27200264IPR003657WRKY domain
SuperFamilySSF1182901.83E-24204264IPR003657WRKY domain
SMARTSM007741.2E-33205263IPR003657WRKY domain
PfamPF031066.5E-23207262IPR003657WRKY domain
PROSITE profilePS5081122.435207264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-35365439IPR003657WRKY domain
SuperFamilySSF1182903.66E-29371439IPR003657WRKY domain
PROSITE profilePS5081135.737374439IPR003657WRKY domain
SMARTSM007747.2E-39379438IPR003657WRKY domain
PfamPF031062.4E-25380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGEKLKSSSI SSLTIPPKIP FESFLNFSPG PMTLVSSYFS DPTCPESEYP SFSQLLAGAM  60
ASPLAKEENL EKGFKSNRPM NLIVAANSPP LFSVPSLFSP SGFLNSPGFF SPLQSPFGMS  120
HQQALAHVTA QAALSQSYSQ AEHHFSSQGA SSQVLGHEMS TGSKETSLQP QLDTTPSDQQ  180
TKKSELPLVS QSEDKPSFTS VDRPACDGYN WRKYGQKMVK TSECPRSYYK CTHLKCPVKK  240
KVERSIDGHI TEITYKGHHN HELPEPTKRR RDSCAQDGLD CSKVKPEVDV GSGTEINCFN  300
GALPAHSEHV STEMASEVLV SNECNEIEDS ATVTGEGHDD EPNAKKMKTT IETPPLASSN  360
KAVSESKIVV QTRSEVDILD DGFKWRKYGQ KVVKGNHHPR SYYRCTYPGC NVRKHVERAS  420
ADPKSVVTTY EGKHNHDIPV ARNRGHSTTH DSTRQLNEQD IATWRPSLPE KVAFHNNNEI  480
PVCRQLEEQI AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36207439877Probable WRKY transcription factor 4
2lex_A1e-36207439877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111350.0AB711135.1 Nicotiana benthamiana NbWRKY14 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768106.10.0PREDICTED: probable WRKY transcription factor 4
RefseqXP_016502077.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-118WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1S4CLE80.0A0A1S4CLE8_TOBAC; probable WRKY transcription factor 4
TrEMBLA0A1U7VT370.0A0A1U7VT37_NICSY; probable WRKY transcription factor 4
STRINGXP_009768106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-107WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]