PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01225g01044.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 601aa MW: 66851.8 Da PI: 7.8267

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01225g01044.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24	1.2e-07	84	160	1	78
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 +fY+++Ak+ GFs++k++ kk+ ++ + i +r++ C + gk+++ +++ k++ + + C+ +l+ +++ d+ + + Peinf101Scf01225g01044.1 84 DFYQDHAKKYGFSITKRSCKKQsSEYELIATRRLSCHEAGKPARYQTS--KKEFEGRWAQFICDPRLRENQWLDDIYSI 160 6*************999988466677889*********998877..66666677777777777766666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-5	84	160	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.435	294	332	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0042	307	334	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MQSLMDVEES SMQAGPGNTA SVLSQVLGVH QDDSLFDNRS NSSMAGENND PNVVTGEGPG 60 INLRAPAGGP IVGMKFPSLE AMVDFYQDHA KKYGFSITKR SCKKQSSEYE LIATRRLSCH 120 EAGKPARYQT SKKEFEGRWA QFICDPRLRE NQWLDDIYSI RSQWVPVYLT DTFWAGMRST 180 QRSESMHAFF DQFITSRTNL LTFVMQYEVA LKTKLDKELK EEESSKNTRL FSVTGSQWEE 240 QLRAGLTRNI YDMHRKQIQD SIGCNFVGFN VQDEVETFSV SDTGMGLNYA GTEYIMTVVY 300 KRDGQYLDCT CKLFNTRGII CRHMILVVKY HQMPELNERY IMRRWRGDIS RPHLWAYVPE 360 GYPQMSDEFK RLHGLKGIFY KCAERAIQSD KLTRKLGLEL VASFGKPNND EPVPDDIHDV 420 EDHRSDVPIL DPRFLRSKGR PCLIRVRNNW NRRQRTYGTS RRGWGRSRAG AAGAGRGSGR 480 VDESNGNHGV DASRGSGRGG KGGSRGACGA GRGSGGVDAS NGNGDVDASK GNAAVDATAA 540 CVVNATGGNS GVDARRGTQF NASSGEADDD AVVECSIANA SDALLKLILC DETFLNQFYF 600 L

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MQSLMDVEES SMQAGPGNTA SVLSQVLGVH QDDSLFDNRS NSSMAGENND PNVVTGEGPG  60
INLRAPAGGP IVGMKFPSLE AMVDFYQDHA KKYGFSITKR SCKKQSSEYE LIATRRLSCH  120
EAGKPARYQT SKKEFEGRWA QFICDPRLRE NQWLDDIYSI RSQWVPVYLT DTFWAGMRST  180
QRSESMHAFF DQFITSRTNL LTFVMQYEVA LKTKLDKELK EEESSKNTRL FSVTGSQWEE  240
QLRAGLTRNI YDMHRKQIQD SIGCNFVGFN VQDEVETFSV SDTGMGLNYA GTEYIMTVVY  300
KRDGQYLDCT CKLFNTRGII CRHMILVVKY HQMPELNERY IMRRWRGDIS RPHLWAYVPE  360
GYPQMSDEFK RLHGLKGIFY KCAERAIQSD KLTRKLGLEL VASFGKPNND EPVPDDIHDV  420
EDHRSDVPIL DPRFLRSKGR PCLIRVRNNW NRRQRTYGTS RRGWGRSRAG AAGAGRGSGR  480
VDESNGNHGV DASRGSGRGG KGGSRGACGA GRGSGGVDAS NGNGDVDASK GNAAVDATAA  540
CVVNATGGNS GVDARRGTQF NASSGEADDD AVVECSIANA SDALLKLILC DETFLNQFYF  600
L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-27	FAR1-related sequence 6