PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01234g01011.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 231aa MW: 26061.7 Da PI: 4.7184

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01234g01011.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.4	1.1e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+lk+l+++e + dam+s+++eAe++ r PvyG+v+ i +l+ Peinf101Scf01234g01011.1 10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILKQLDDDEmKGDAMKSIIFEAEMWERFPVYGCVEYICHLR 94 7**********************************************888779************************** PP DUF260 85 qqleqlkaelallkee 100 qql+ + +el+++ ++ Peinf101Scf01234g01011.1 95 QQLQVALEELHYVYAQ 110 *******9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.923	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-37	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILKQLDD 60 DEMKGDAMKS IIFEAEMWER FPVYGCVEYI CHLRQQLQVA LEELHYVYAQ LAIYREQQQQ 120 LAMQCGVTTP DEIPFVNGMT VGPFLTSDGE SSEGGLKPLL GSDSLLDLTR NNHVTYDHNS 180 LGFGIREERD ISQEYECLIN PFNNIMADDR QSFDELRNAA ACFSLTSAVT L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-24	2	114	4	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-24	2	114	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434883.1	1e-128	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9STS6	5e-39	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1S3X592	1e-126	A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRING	XP_009612871.1	1e-122	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-41	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]