PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01234g01019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 94aa MW: 10557 Da PI: 5.0638

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01234g01019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.1	6.4e-11	14	50	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRt 36 rg+WT+eEd +++ +v+ +G g+W++++++ g ++ Peinf101Scf01234g01019.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGmSNKE 50 89****************************9975555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-13	5	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.74E-11	8	55	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.028	9	66	IPR017930	Myb domain
Pfam	PF00249	1.9E-8	14	49	IPR001005	SANT/Myb domain
CDD	cd00167	1.53E-6	16	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MGRPPCCDKT NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGMSNKE NPSCVQVTQV 60 EEKKSVDSFV DNILARDKQM QLDYPPLLDV YLDY

Functional Description ? help Back to Top
Source	Description
UniProt	Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269\|PubMed:18397379, ECO:0000269\|PubMed:21957980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606135.1	9e-26	PREDICTED: transcription factor MYB35
Refseq	XP_016441905.1	9e-26	PREDICTED: transcription factor MYB35-like
Refseq	XP_016471810.1	5e-26	PREDICTED: transcription factor MYB35-like
Swissprot	Q9LSI7	4e-22	MYB35_ARATH; Transcription factor MYB35
TrEMBL	A0A1S4A5C4	1e-24	A0A1S4A5C4_TOBAC; transcription factor MYB35-like
STRING	XP_009606135.1	3e-25	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20441	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	3e-24	MYB family protein

Publications ? help Back to Top
Tsugama D, et al. A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis. Sci Rep, 2017. 7: p. 41497 [PMID:28176806] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Li DD,Xue JS,Zhu J,Yang ZN Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 1559 [PMID:28955355]