PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01245g03005.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 325aa MW: 34541.2 Da PI: 9.0175

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01245g03005.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.8	2.3e-39	40	162	5	115
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+ + s++ Peinf101Scf01245g03005.1 40 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNLSLRSSGTTISAP 124 899***************************************************************9997666666666644444 PP TCP 89 .................kaaksaakskksqksaasalnlakesr 115 ++ + ++++ ++++k r Peinf101Scf01245g03005.1 125 psksaplfmhggattmlG------FQQTNFGQDTNGNSMKKRYR 162 554555666642222220......33333333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.706	43	97	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.6E-37	43	164	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEFRETHGKN QDGGGSSATT TNTNNNNSDN NNSLTNKIVK KPSKDRHTKV DGRGRRIRMP 60 ALCAARVFQL TRELGHKSEG ETIEWLLQQA EPSIIAATGT GTIPANFSTL NLSLRSSGTT 120 ISAPPSKSAP LFMHGGATTM LGFQQTNFGQ DTNGNSMKKR YREDTSGATS PSAAEPAGQE 180 SKPGSSNFIP PPGMWAVAPA SGNLGSTFWM LPVTGGAGAT TASVGVSQQD HQLWQYKGLA 240 MQRLGGYELS GGAQFSTPVQ LGSMFLQQPV QQLGLGVPET NMGMLASMNA YNSSRSNKVD 300 LGMNLEQHHH QGSDSGDENH KDSQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775051.1	1e-149	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	3e-67	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A1U7WCU1	1e-148	A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRING	XP_009775051.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-62	TCP family protein