PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01252g02024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 237aa    MW: 27287.3 Da    PI: 4.6861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01252g02024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-091445132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              +g WT+eEd +l+ +v+++G  +W+  +++ g
  Peinf101Scf01252g02024.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAG 45
                              799*****************99****999988 PP
2Myb_DNA-binding28.53.7e-09132163132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                               +g WT+eEd +l+ +v++ G  +W+  +++ g
  Peinf101Scf01252g02024.1 132 KGTWTPEEDRKLAAYVTKNGCLNWRQLPKHAG 163
                               799***************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-10643IPR009057Homeodomain-like
PROSITE profilePS512949.496953IPR017930Myb domain
SuperFamilySSF466891.06E-71143IPR009057Homeodomain-like
SMARTSM007176.71364IPR001005SANT/Myb domain
PfamPF002498.3E-71445IPR001005SANT/Myb domain
CDDcd001670.001961646No hitNo description
PROSITE profilePS500906.493127187IPR017877Myb-like domain
SuperFamilySSF466894.19E-7128163IPR009057Homeodomain-like
SMARTSM007171.2131178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-9131163IPR009057Homeodomain-like
PfamPF002499.8E-7132163IPR001005SANT/Myb domain
CDDcd001670.00105134164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGDSHMS PKQSISEELS  60
SNTTDYQQQD VASVIREEEL YHVEALAEIS GNFWTEPFLL DSFSSRFDFR APSIDCGLMV  120
RTPCRDEYGR KKGTWTPEED RKLAAYVTKN GCLNWRQLPK HAGSQWSLKQ SSSEEISSCT  180
PDYQQLDIAS DIREVKVFEE EAYLAESCGS FWTEPFVVDS FSSRLHDCLA PSIDFEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754465e-41HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-13myb domain protein 93