PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01254g04013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 227aa MW: 25338 Da PI: 4.7226

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01254g04013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.5	2.7e-12	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l+d+++++G+g+W+t ++ g Peinf101Scf01254g04013.1 14 KGPWTAEEDQKLIDYIQKHGSGNWRTLPKNAG 45 79*************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-14	5	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.87E-9	8	45	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.692	9	66	IPR017930	Myb domain
SMART	SM00717	0.0048	13	71	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-9	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	3.01E-7	16	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGRTPCCDKN GLKKGPWTAE EDQKLIDYIQ KHGSGNWRTL PKNAGVQPLL NPEILRLATS 60 LLSSQRQNQN FLLPSNFQEN QLCNSQVQNQ MTPFVQASQI QTPIQNISTC TPSSTPCVPF 120 SSEAQVMQQP NMEQFPSNLS YFSAQNCQQN EWQLNNGIAS KMNEHNFPSQ NYVFSTLSTP 180 SSSPASFNSN STCINSSSTT SEGERESYSS SMLNFDIPNI FDVNEFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229348.1	6e-58	PREDICTED: protein ODORANT1
TrEMBL	A0A314KLT6	1e-56	A0A314KLT6_NICAT; Transcription factor myb39
STRING	XP_009801248.1	2e-55	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-26	MYB-like 102