PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01267g05018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HB-other

Protein Properties

Length: 1707aa MW: 191716 Da PI: 6.3812

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01267g05018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.4e-18	41	95	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k Peinf101Scf01267g05018.1 41 KRKMKTASQLEILEKTYATETYPSEAVRAELSVKLGLSDRQLQMWFCHRRLKDRK 95 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-16	26	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-15	33	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.325	36	96	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	38	100	IPR001356	Homeobox domain
CDD	cd00086	6.09E-13	39	95	No hit	No description
Pfam	PF00046	6.5E-16	41	95	IPR001356	Homeobox domain
SMART	SM00571	4.2E-23	578	637	IPR018501	DDT domain
PROSITE profile	PS50827	16.855	578	637	IPR018501	DDT domain
Pfam	PF02791	4.2E-18	579	634	IPR018501	DDT domain
Pfam	PF05066	4.4E-9	756	835	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.2E-8	986	1026	IPR028942	WHIM1 domain
Pfam	PF15613	3.6E-13	1169	1241	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1707 aa Download sequence Send to blast
MELHSSAAAA TGGGGGGGGG GSGSSDVEKK KVLEAGEPKV KRKMKTASQL EILEKTYATE 60 TYPSEAVRAE LSVKLGLSDR QLQMWFCHRR LKDRKATTPV KRQKTEASPV AMVSSGGGQG 120 DEMAMSGEIG KEHASGSGSR ISPIGLVDLQ LLQHQQHHQQ RVVHRPGTAV PRCRTEMPAL 180 KRYYEPPQSV SELRAIAFVE AQLGEPLKED GPILGMEFDP LPPGAFGAPI VAATQHKPAG 240 RPFEAHIYER PDNSIKGTTR TLREYQFLPE QPSIRSDTYE QSVSSHHYSP IEVQSTRTML 300 STVKSYTQGS EQVASGFSFP GQIPTLNLLP QQGRQGHVTP ASAEADVVPL RSLVNVEVEA 360 NYGGLPMTAL ESLCIPSDTR VGHDEERLER KRKSEEARIA REVEAHEKRI RKELEKQDML 420 RRKREEQMRK DMERQDRERR KEEERLLREK QREEERYQRE QRREMERREK FLQKESIRVE 480 KMRLKEEMRQ KKEVARLKAA NVRATARRIA KESVELIEDE HMELMELAAS KKGLPTISSL 540 DSETLQNLEA FRDMLNEFPP KSVCLRKPFG VEPWICSEEA VGNLLMVWRF LITFSDVLRL 600 WPFTLDEFVQ SFHDYDPRLL GEIHIALLKL IIKDIEDIAR TPASVVGANP NSGGGHPEIV 660 EGAYAWGFDI RSWQSHLNAL TWPEILRQFA LSAGFGPKLK KQSVEPAYPR DENEGNDGAD 720 IISNLRSGVA AENAIAKMQQ RGFSTSRRSR HRLTPGTVKF AAFHVLSLEG SKGLNILEVA 780 EKIQLTIFFF FLLFVKKSGL RDLTTSKTPE ASISAALSRD TKLFERTAPS TYCVRDPYRK 840 DPADADAILS GAREKIRAFK NECVNGEEAE DVEKEDAERD DESESDAADD PEVDDLVPEL 900 KFKETPQSHQ TDRTDGMNST VNASEVLRFD LTRTPEDLSL QKSTRIMHSE GFGELKPVGT 960 SDDQTTAIDA DASILYQEDT VIDESNAGQK WVQGLMEGEY SDLTVEERLD ALAALIGVAN 1020 EGNSIRLVLE ERLEAASALK KQIWAEAQLD KRRFKEEFLL KVQYPSSSSN AEQLCSITPV 1080 ETRQSPLLVV DGQNEVEAVP SLQQEVMHKL PDESNNSSDV ALEKTCPMQE IHGGQDNSQL 1140 QSFAYVAELS RSQLKAYIVH RAEETFVYRS LPLGQDRRRN RYWQFTTSPS RNDPGSGRIF 1200 VELRDGRWRL IDSEKDFNAL MASLDVRGLR ESHLHSMLQK IEATFKETAR THKCVEEKVE 1260 NPVKEEASET APSNDCSSNT GSPKSTICVS NCETPEPSNS FLIGLGRNKM ETADALRRYS 1320 DLEKWMWEEC VNSQLLCAKK YGRMRCKRLI NICNNCHATY FLEDNHCPCC HRTLSPTNSS 1380 YFMEHVAQCK EKLEDLFGPL CILDSSPPLR IRLLRAQLAS MEACIPPEAL QPLWSEVYRR 1440 SWGLKLQIAL AAGDLLQVLL LSIFSGAIKR EYLMSNYETT SEMLDAVSNS NLDRMGVLPW 1500 VPHTTSAVAL RLMELDSSLC YTEQQKADSV KDKETTDFIT LKTNYADMKS HSGVLSAEAS 1560 RVYENLELDK HANSGRGRNS GRGARSRVGG GRSQRKVSAS RSASARRSST KNSDEFGHIT 1620 AWKGRDRAKG RRKKGRRSVR NKQKPVKNVE IAAVEKVPVS RQQNWKEDKD RETAAAFEPP 1680 DNDSDSGTSG SGEDNDQATG DDYEDLM

Sequence ? help Back to Top

Protein Sequence Length: 1707 aa Download sequence Send to blast

MELHSSAAAA TGGGGGGGGG GSGSSDVEKK KVLEAGEPKV KRKMKTASQL EILEKTYATE  60
TYPSEAVRAE LSVKLGLSDR QLQMWFCHRR LKDRKATTPV KRQKTEASPV AMVSSGGGQG  120
DEMAMSGEIG KEHASGSGSR ISPIGLVDLQ LLQHQQHHQQ RVVHRPGTAV PRCRTEMPAL  180
KRYYEPPQSV SELRAIAFVE AQLGEPLKED GPILGMEFDP LPPGAFGAPI VAATQHKPAG  240
RPFEAHIYER PDNSIKGTTR TLREYQFLPE QPSIRSDTYE QSVSSHHYSP IEVQSTRTML  300
STVKSYTQGS EQVASGFSFP GQIPTLNLLP QQGRQGHVTP ASAEADVVPL RSLVNVEVEA  360
NYGGLPMTAL ESLCIPSDTR VGHDEERLER KRKSEEARIA REVEAHEKRI RKELEKQDML  420
RRKREEQMRK DMERQDRERR KEEERLLREK QREEERYQRE QRREMERREK FLQKESIRVE  480
KMRLKEEMRQ KKEVARLKAA NVRATARRIA KESVELIEDE HMELMELAAS KKGLPTISSL  540
DSETLQNLEA FRDMLNEFPP KSVCLRKPFG VEPWICSEEA VGNLLMVWRF LITFSDVLRL  600
WPFTLDEFVQ SFHDYDPRLL GEIHIALLKL IIKDIEDIAR TPASVVGANP NSGGGHPEIV  660
EGAYAWGFDI RSWQSHLNAL TWPEILRQFA LSAGFGPKLK KQSVEPAYPR DENEGNDGAD  720
IISNLRSGVA AENAIAKMQQ RGFSTSRRSR HRLTPGTVKF AAFHVLSLEG SKGLNILEVA  780
EKIQLTIFFF FLLFVKKSGL RDLTTSKTPE ASISAALSRD TKLFERTAPS TYCVRDPYRK  840
DPADADAILS GAREKIRAFK NECVNGEEAE DVEKEDAERD DESESDAADD PEVDDLVPEL  900
KFKETPQSHQ TDRTDGMNST VNASEVLRFD LTRTPEDLSL QKSTRIMHSE GFGELKPVGT  960
SDDQTTAIDA DASILYQEDT VIDESNAGQK WVQGLMEGEY SDLTVEERLD ALAALIGVAN  1020
EGNSIRLVLE ERLEAASALK KQIWAEAQLD KRRFKEEFLL KVQYPSSSSN AEQLCSITPV  1080
ETRQSPLLVV DGQNEVEAVP SLQQEVMHKL PDESNNSSDV ALEKTCPMQE IHGGQDNSQL  1140
QSFAYVAELS RSQLKAYIVH RAEETFVYRS LPLGQDRRRN RYWQFTTSPS RNDPGSGRIF  1200
VELRDGRWRL IDSEKDFNAL MASLDVRGLR ESHLHSMLQK IEATFKETAR THKCVEEKVE  1260
NPVKEEASET APSNDCSSNT GSPKSTICVS NCETPEPSNS FLIGLGRNKM ETADALRRYS  1320
DLEKWMWEEC VNSQLLCAKK YGRMRCKRLI NICNNCHATY FLEDNHCPCC HRTLSPTNSS  1380
YFMEHVAQCK EKLEDLFGPL CILDSSPPLR IRLLRAQLAS MEACIPPEAL QPLWSEVYRR  1440
SWGLKLQIAL AAGDLLQVLL LSIFSGAIKR EYLMSNYETT SEMLDAVSNS NLDRMGVLPW  1500
VPHTTSAVAL RLMELDSSLC YTEQQKADSV KDKETTDFIT LKTNYADMKS HSGVLSAEAS  1560
RVYENLELDK HANSGRGRNS GRGARSRVGG GRSQRKVSAS RSASARRSST KNSDEFGHIT  1620
AWKGRDRAKG RRKKGRRSVR NKQKPVKNVE IAAVEKVPVS RQQNWKEDKD RETAAAFEPP  1680
DNDSDSGTSG SGEDNDQATG DDYEDLM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	21	TGGGGGGGGGGS
2	1342	1347	RMRCKR
3	1622	1633	KGRDRAKGRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-168	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227825.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2-like
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A314KQP3	0.0	A0A314KQP3_NICAT; Homeobox-ddt domain protein rlt2
STRING	XP_009631239.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	Homeodomain-like transcriptional regulator