PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01278g05026.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22508.7 Da    PI: 9.3421
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01278g05026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.37.1e-32959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Peinf101Scf01278g05026.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                              79***********************************************96 PP
2K-box78.22e-2682164991
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                               + ++++++ +qe+ kLk ++e Lq++qRh+lG dL++Ls k+L+qLe+qL++sl++iRs++++ l+e+ + l++k   ++   
  Peinf101Scf01278g05026.1  82 QPSTDSQNIYQEYLKLKTRVEALQQSQRHMLGADLGQLSTKDLEQLERQLDSSLRQIRSTREQSLIEMNKSLRMKASLQNTCS 164
                               567889*********************************************************************87665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.726161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-42160IPR002100Transcription factor, MADS-box
CDDcd002654.99E-43278No hitNo description
SuperFamilySSF554555.49E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-2183160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.12187178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMSTTLEKY HRYCYGALEG SQPSTDSQNI YQEYLKLKTR VEALQQSQRH MLGADLGQLS  120
TKDLEQLERQ LDSSLRQIRS TREQSLIEMN KSLRMKASLQ NTCSENLSCY RYNTVPPEHV  180
VPSSAQDSTG VLPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21173172MEF2C
5f28_B6e-21173172MEF2C
5f28_C6e-21173172MEF2C
5f28_D6e-21173172MEF2C
6byy_A6e-21173172MEF2 CHIMERA
6byy_B6e-21173172MEF2 CHIMERA
6byy_C6e-21173172MEF2 CHIMERA
6byy_D6e-21173172MEF2 CHIMERA
6bz1_A6e-21173172MEF2 CHIMERA
6bz1_B6e-21173172MEF2 CHIMERA
6bz1_C6e-21173172MEF2 CHIMERA
6bz1_D6e-21173172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352340.0AF335234.1 Petunia x hybrida MADS-box transcription factor FBP4 (FBP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615089.11e-105PREDICTED: MADS-box protein CMB1-like isoform X2
SwissprotK4BND81e-93MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLQ9ATF31e-116Q9ATF3_PETHY; MADS-box transcription factor FBP4
STRINGXP_009615088.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]