PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01278g05031.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23935.2 Da    PI: 9.3306
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01278g05031.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-261056248
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              rienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gk+ e
  Peinf101Scf01278g05031.1 10 RIENKINRQVTFSKRRGGLVKKANEISVLCDAEVALIVFSHNGKILE 56
                              8******************************************9865 PP
2K-box67.73.9e-23751561291
                     K-box  12 akaesl.qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne.llleqieelqkkekelqeen 91 
                               + +e++ q e+ kLk++i+ Lqr+++h++GedL+sL+lk++q+LeqqL+++lk iRs+K     +++ ++  +++ e +++n
  Peinf101Scf01278g05031.1  75 SVQENWsQLEYIKLKAKIDLLQRNHKHYMGEDLDSLTLKDMQNLEQQLDTALKLIRSRKAYsTHIKEKDKIVRQQAEWHQQN 156
                               334555166*************************************************963033444444444555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.296156IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-27274IPR002100Transcription factor, MADS-box
CDDcd002654.58E-33264No hitNo description
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-241054IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.3E-1973157IPR002487Transcription factor, K-box
PROSITE profilePS5129711.68578158IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLVK KANEISVLCD AEVALIVFSH NGKILERYER  60
YSYAERRLLA SDEASVQENW SQLEYIKLKA KIDLLQRNHK HYMGEDLDSL TLKDMQNLEQ  120
QLDTALKLIR SRKAYSTHIK EKDKIVRQQA EWHQQNQDPS TSFLLQPHPF LNIGGNNQGE  180
AAEGRRNELD LNLESLFPCH MGCYPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16156156MEF2C
5f28_B5e-16156156MEF2C
5f28_C5e-16156156MEF2C
5f28_D5e-16156156MEF2C
6byy_A4e-16156156MEF2 CHIMERA
6byy_B4e-16156156MEF2 CHIMERA
6byy_C4e-16156156MEF2 CHIMERA
6byy_D4e-16156156MEF2 CHIMERA
6bz1_A4e-16156156MEF2 CHIMERA
6bz1_B4e-16156156MEF2 CHIMERA
6bz1_C4e-16156156MEF2 CHIMERA
6bz1_D4e-16156156MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0687248e-49AF068724.1 Nicotiana tabacum MADS-box protein MADS5 (NtMADS5) mRNA, complete cds.
GenBankJQ6869398e-49JQ686939.1 Nicotiana tabacum cultivar SR1 apetala 1 protein (AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256939.11e-113PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S74e-88AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1J6IL621e-112A0A1J6IL62_NICAT; Floral homeotic protein apetala 1 c
STRINGXP_009778843.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]