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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peinf101Scf01278g08037.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 188aa MW: 21410.1 Da PI: 10.0648 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 26.4 | 2.2e-08 | 61 | 124 | 1 | 70 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70
kfY ++A++ sv++++ ++ ++n+ i+ + fvCskeg r+++ + + ++r et Cka++ k
Peinf101Scf01278g08037.1 61 KFYLDHAYR---SVCRNQISRARKNKPIIGQGFVCSKEGLRSKKGLE---STKQRDETIECCKAEIPAIK 124
578888887...79999999999********************9888...8889999999****995433 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.6E-6 | 61 | 124 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 188 aa Download sequence Send to blast |
FKDENKITPV ICALEDKLVI SNLPNQNIVG VGGSLEKLEM NKELRAPYIG MEFQSLDIVF 60 KFYLDHAYRS VCRNQISRAR KNKPIIGQGF VCSKEGLRSK KGLESTKQRD ETIECCKAEI 120 PAIKKKKVIG LEKSIDLLDN VGVRPSKIAP VLINQTKILE KGDAQLMLKY FQKRQSKSSR 180 FFYPIQMD |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025884722.1 | 4e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A3Q7EE03 | 6e-51 | A0A3Q7EE03_SOLLC; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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