PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01285g07007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 397aa MW: 44246.6 Da PI: 8.0356

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01285g07007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.1	3.1e-29	59	158	1	98
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCa+Ck++r+kC+++ Cv+ ++fpa+++ +f vhk+FG snv k +k+l++ +++a++s ++eA+ +++dPvyG +g ++kl Peinf101Scf01285g07007.1 59 ACASCKHQRKKCTEGdCVMWRHFPANRMDEFLGVHKVFGISNVAKKIKSLDDVAqQDEAIKSFLWEAKLWQEDPVYGPLGEYKKL 143 7*********9966******************************665439************************* PP DUF260 84 qqqleqlkaelallk 98 +q+l++lk++ ++ Peinf101Scf01285g07007.1 144 EQELKELKEQQRNQQ 158 ******9887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.324	58	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-30	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
CHARTLDATV AMFLFPKYFF NNYLLCSIFS LISTGSTIMS NNNNNNSAAE SHETSNRPAC 60 ASCKHQRKKC TEGDCVMWRH FPANRMDEFL GVHKVFGISN VAKKIKSLDD VAQQDEAIKS 120 FLWEAKLWQE DPVYGPLGEY KKLEQELKEL KEQQRNQQLQ IAQLPDVPLP PTPAEPRYLM 180 AAPRAVDSAN FLHNEEDYNL LNYTLPNYTT HLQGLGGESQ GTVSGGGGRI NGFGFGFPMP 240 IEQRQNSFFP RPGFQGVAHQ ATYNTHVQLQ QHVCSYNNMN LLGQGARGIR TRKEHNELVT 300 PSSTTRNVRG RGVGPISSTS SSFVDSTGNN AGTMAVRPSS VGRHSETPIS LTADGRNHSN 360 GDLAAVFQDF KNYNNHDLSG KYLTLLLYEN FLFSRCL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

CHARTLDATV AMFLFPKYFF NNYLLCSIFS LISTGSTIMS NNNNNNSAAE SHETSNRPAC  60
ASCKHQRKKC TEGDCVMWRH FPANRMDEFL GVHKVFGISN VAKKIKSLDD VAQQDEAIKS  120
FLWEAKLWQE DPVYGPLGEY KKLEQELKEL KEQQRNQQLQ IAQLPDVPLP PTPAEPRYLM  180
AAPRAVDSAN FLHNEEDYNL LNYTLPNYTT HLQGLGGESQ GTVSGGGGRI NGFGFGFPMP  240
IEQRQNSFFP RPGFQGVAHQ ATYNTHVQLQ QHVCSYNNMN LLGQGARGIR TRKEHNELVT  300
PSSTTRNVRG RGVGPISSTS SSFVDSTGNN AGTMAVRPSS VGRHSETPIS LTADGRNHSN  360
GDLAAVFQDF KNYNNHDLSG KYLTLLLYEN FLFSRCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-14	60	153	12	103	LOB family transfactor Ramosa2.1
5ly0_B	5e-14	60	153	12	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769644.1	2e-42	PREDICTED: uncharacterized protein LOC104220462
TrEMBL	A0A1J6ITB1	1e-113	A0A1J6ITB1_NICAT; Lob domain-containing protein 2
STRING	XP_009619683.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-19	LOB domain-containing protein 2