PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01294g04007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family E2F/DP
Protein Properties Length: 354aa    MW: 38492.8 Da    PI: 7.1294
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01294g04007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27102184271
                   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirw 69 
                               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Peinf101Scf01294g04007.1 102 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdptnslaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 182
                               689********...*****999*******************************************************.******* PP

                   E2F_TDP  70 kg 71 
                               kg
  Peinf101Scf01294g04007.1 183 KG 184
                               98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-12815354IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.1E-4697188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.0E-36101184IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-25103184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.9E-21104185IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.33E-43190292IPR014889Transcription factor DP, C-terminal
SMARTSM011381.7E-74191352IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.59E-43191303No hitNo description
PfamPF087815.8E-42192323IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVNNLEEGGN NHPLEVSRGG NNGGRVGGGG GGGTRSWGTT VSGQSVSTSS SVGSPSGHPV  60
SDNTFLRLNN LDIHADDAGS QGGVAANGKK KRGQRATGGD KSGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFSDPT NSLASPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTDV NDIEELKAER LSLRNRIEKK ATYLQELEEQ HVGLQNLIKR NEQLYGSGNT  240
PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCGKPKN  300
DVTQNVSVDG GEGSSMANMF QHQLPHPSAP NTSGRPPTSP PIPGILKARV KHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-4095186190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230GGRVGGGGG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595017.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_009595018.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_016484172.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_016484236.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-155DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_009595017.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-145Transcription factor DP