PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01315g00012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 423aa MW: 47043.4 Da PI: 6.6045

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01315g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.4	1.6e-33	55	109	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Peinf101Scf01315g00012.1 55 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 109 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.38	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-31	53	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-17	54	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-24	55	110	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-10	57	108	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-25	153	199	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
LLANHHIQGH NMYHHHHQAA NVHPSTRMSY PERHLFLQGG NANGDSGLVL STDAKPRLKW 60 TPDLHERFIE AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQSNTS 120 GTIKAAAGIE KISESSGTPM SNPIIGQPND DIPISEALQM QIEVQRRLHE QLEVQRHLQL 180 RIEAQGKYLQ AVLEKAQETL GTQNLGTIGL EAAKVQLSDL VSKVSNQSLN SAFSEIKEIS 240 GFHTPQTQAN QQGADCSINS CLTSSEGPLR DLQEMHNNQI GLRPLNFGPN ENETRLQQTE 300 LRWRDDLNEN GKLFTKINED TEKEFANETN WSNLSMGIGL QGGKQNVNSS YFDGRLNGID 360 ADIKLFHKAA DRSSNSVKPE KQMSSQEYNK LPYFAPKLDL NTDDQTDAAS SCEQLDLNGF 420 SWS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

LLANHHIQGH NMYHHHHQAA NVHPSTRMSY PERHLFLQGG NANGDSGLVL STDAKPRLKW  60
TPDLHERFIE AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQSNTS  120
GTIKAAAGIE KISESSGTPM SNPIIGQPND DIPISEALQM QIEVQRRLHE QLEVQRHLQL  180
RIEAQGKYLQ AVLEKAQETL GTQNLGTIGL EAAKVQLSDL VSKVSNQSLN SAFSEIKEIS  240
GFHTPQTQAN QQGADCSINS CLTSSEGPLR DLQEMHNNQI GLRPLNFGPN ENETRLQQTE  300
LRWRDDLNEN GKLFTKINED TEKEFANETN WSNLSMGIGL QGGKQNVNSS YFDGRLNGID  360
ADIKLFHKAA DRSSNSVKPE KQMSSQEYNK LPYFAPKLDL NTDDQTDAAS SCEQLDLNGF  420
SWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-22	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	54	111	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339130.1	0.0	PREDICTED: uncharacterized protein LOC102602766 isoform X1
Refseq	XP_015089339.1	0.0	myb-related protein 2-like isoform X1
Refseq	XP_015089340.1	0.0	myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-123	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A3Q7JG39	0.0	A0A3Q7JG39_SOLLC; Uncharacterized protein
STRING	XP_009770704.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-125	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]