PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01332g02008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

Protein Properties

Length: 185aa MW: 21655.7 Da PI: 5.3573

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01332g02008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.8	3e-11	21	110	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 ++++ +++ ++lp k + +h ++ + +t+++ +W++kl +k + + +GW++Fv + gLkegD +vF+l + Peinf101Scf01332g02008.1 21 ILSKSCIQKDDFILPPKIL-QHLPVTVVP--ITIRN-GQIEWNMKL--NKLCAKRRFFDGWSKFVTDTGLKEGDGLVFELLeCNn 99 4455556666799999998.553343334..44444.6689***..66555555668******************653666 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ + +v++++ Peinf101Scf01332g02008.1 100 KNVKSKVQILD 110 77777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-12	11	110	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-12	13	102	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.06E-10	16	110	No hit	No description
PROSITE profile	PS50863	11.124	17	112	IPR003340	B3 DNA binding domain
SMART	SM01019	8.0E-5	18	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-9	18	109	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MAYRNEESTP IDTSKPFFDS ILSKSCIQKD DFILPPKILQ HLPVTVVPIT IRNGQIEWNM 60 KLNKLCAKRR FFDGWSKFVT DTGLKEGDGL VFELLECNNK NVKSKVQILD GSFREELFQE 120 LGEARNRDFA HQIDQLNRDM DMLRGLYNFL SRDIDDMRGE IRFVMQKLFE HTAQFDDGAM 180 HNEQM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54