PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01347g00007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB

Protein Properties

Length: 257aa MW: 28085.6 Da PI: 6.5056

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01347g00007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.2	4.3e-19	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l+++v q+G+++W++I+ ++ gR++k+c++rw + Peinf101Scf01347g00007.1 10 KGSWSPEEDNMLIKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 55 799***************************.*********985 PP
2	Myb_DNA-binding	56.4	7.1e-18	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++++G++ W+tIar ++ gRt++ +k++w++ Peinf101Scf01347g00007.1 64 PFTPSEDAIILQAHALHGNR-WATIARLLP-GRTDNAIKNHWNST 106 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.428	5	60	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-31	7	103	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	9	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-18	10	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-25	11	63	IPR009057	Homeodomain-like
CDD	cd00167	5.49E-16	12	54	No hit	No description
SMART	SM00717	7.9E-16	61	109	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.324	61	111	IPR017930	Myb domain
CDD	cd00167	1.71E-13	64	107	No hit	No description
Pfam	PF00249	2.6E-15	64	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-23	64	110	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEGTTGDKIK GSWSPEEDNM LIKLVDQHGP RNWSLISTGI PGRSGKSCRL RWCNQLSPTV 60 QHRPFTPSED AIILQAHALH GNRWATIARL LPGRTDNAIK NHWNSTLRRK RHGPPLSRSG 120 SSSDQSNLKR HCTRASQEQS SCGLECDDLG LDGPNGLDGD ELGLDGPETS LTLSLPGGGS 180 IDSPMKEDVP VKESEPLINS DNKVKEEKCT VEIEETCLVT IMQRMIAHEV RCYIDKLRAQ 240 GGLGIGPGVE SEVPKNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-40	9	110	3	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785340.1	1e-135	PREDICTED: myb protein-like
Refseq	XP_019262180.1	1e-135	PREDICTED: myb protein-like
TrEMBL	A0A1U7XFV8	1e-133	A0A1U7XFV8_NICSY; myb protein-like
TrEMBL	A0A314L8L3	1e-133	A0A314L8L3_NICAT; Transcription factor myb44
STRING	XP_009785340.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12883	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	3e-54	myb domain protein 70